PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_41EDFCA77.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 328aa    MW: 36443.2 Da    PI: 9.2314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_41EDFCA77.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05103124323
                            ETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                            C  Cg+ F+ ++ L rH  t H
  Traes_2BL_41EDFCA77.1 103 CRVCGRKFRARDALLRHFDTiH 124
                            9****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.177101129IPR007087Zinc finger, C2H2
PROSITE patternPS000280103124IPR007087Zinc finger, C2H2
CDDcd061673.42E-5192244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSRPLYNLRR RLLASTLRLL PSPSHRLSTT TSTPATRAPT TPVAVLWELA ASRPPSKLPL  60
YDSAVRLHLA ASSFGRLRFS AAFLHPCHRL PDPDPSADAT NLCRVCGRKF RARDALLRHF  120
DTIHTRENTK RLERIESSRG DRRVRLAASL SLKLSKYTKA ARELTAGVNP GSPADELRRA  180
RVHAELSRYP STALRDRAQE VLDDGSVGCL MLVSGREELS PLLRLAKEKG VRTVVVGGES  240
GLARWADTGF TWAEVIAGKA RKAAPSMSGK WRDRDVLKGL EWRYEDDEEE EVVFEEDGDE  300
DGSEELAGSA NGKPWWKLES DGDDSFCT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164485.10.0uncharacterized protein LOC109749961
TrEMBLA0A3B6CAP70.0A0A3B6CAP7_WHEAT; Uncharacterized protein
TrEMBLA0A446MFD10.0A0A446MFD1_TRITD; Uncharacterized protein
STRINGTraes_2BL_41EDFCA77.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.16e-44C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]