PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_0BA3C9692.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 406aa MW: 43278.1 Da PI: 5.0495 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.1 | 7.1e-49 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rFhPtd el +yLk+k+ gkkl + ++++evdiyk+ PwdLp k ++ +++ +wyfF++r +ky+ g+r+nr+t+ gyWkat Traes_2BL_0BA3C9692.1 6 LPPGYRFHPTDVELTLYYLKRKLLGKKLLC-NAVAEVDIYKHAPWDLPaKsSMPTGDLQWYFFCTRGRKYSVGQRANRSTEGGYWKAT 92 79*************************999.88***************4246666888****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v+ ++++vg+k+tLvf+ g+apkg++tdWvm eyrl Traes_2BL_0BA3C9692.1 93 GKDRQVVY-ENRTVGMKRTLVFHAGKAPKGTRTDWVMYEYRL 133 ********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.237 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-25 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MEMPPLPPGY RFHPTDVELT LYYLKRKLLG KKLLCNAVAE VDIYKHAPWD LPAKSSMPTG 60 DLQWYFFCTR GRKYSVGQRA NRSTEGGYWK ATGKDRQVVY ENRTVGMKRT LVFHAGKAPK 120 GTRTDWVMYE YRLVQGEIPD AGVRLDDSVL CKVHKKSGPG PKIGEQYGAP FEEEEEELND 180 KNGDTSCLSP SAPPAAPHSA PGPSHGGMLN SAGQQLAAAS HSGGDSLSVS PANNSNTSGA 240 RPDRASRLDV NWDSIHVEQL ADIIGRLSTN PAGQDGQSSD LTTANQDTEA VFDDSETIFE 300 ITDQVVPSSL CSSLCKQCDK CGVRLVDPLL EPAAGEPYME LNDLLSQCRA AGHAPDGSSS 360 QAVVVSNGEG PALDLELRLG VESSESVGHS SGAVSAAASG SGAPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 6 | 162 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 6 | 162 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 6 | 162 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370777 | 0.0 | AK370777.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116L22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181654.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_020181655.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 2e-67 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A3B6CHF1 | 0.0 | A0A3B6CHF1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_0BA3C9692.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14856 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-57 | NAC domain containing protein 53 |
Publications ? help Back to Top | |||
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