PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_03F3475CD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 274aa    MW: 29534.9 Da    PI: 7.1248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_03F3475CD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEd++l d++ ++G  +W+t++ + g+ R +k+c++rw +yl
  Traes_2BL_03F3475CD.1 15 KGLWSPEEDQKLRDYIVRYGHSCWSTVPVKAGLQRNGKSCRLRWINYL 62
                           678*******************************************97 PP
2Myb_DNA-binding46.58.2e-1569113248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            g +++ E+e    +++ lG++ W+ Ia++++ gRt++++k++w++yl
  Traes_2BL_03F3475CD.1  69 GMFSQAEEETAMSLHATLGNK-WSQIAQHLP-GRTDNEVKNYWNSYL 113
                            5699*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2831062IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-211065IPR009057Homeodomain-like
SuperFamilySSF466891.61E-2713109IPR009057Homeodomain-like
SMARTSM007171.2E-101464IPR001005SANT/Myb domain
PfamPF002497.4E-131562IPR001005SANT/Myb domain
CDDcd001675.56E-101862No hitNo description
PROSITE profilePS5129421.46163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2466116IPR009057Homeodomain-like
SMARTSM007175.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.8E-1369113IPR001005SANT/Myb domain
CDDcd001674.05E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGCKSCQKPK AQHRKGLWSP EEDQKLRDYI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSQAEEETAM SLHATLGNKW SQIAQHLPGR TDNEVKNYWN SYLKKRVEGA  120
RAPAKSAGSD APRSPTPSDS GRERRTVNQP SNSGSSGPPE SSSTGDDSSS LTGPGAAALI  180
RPHAPVLPKV MFADWLDMDM DYGTGLMAPS ALDAAFDCSP VQQGGSNTVD GRCGAEDSLH  240
GLGDGGICWE FEADTQGGAG FCDLLSMSEF LGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25151187109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705130.0AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156819.11e-179transcription factor LAF1-like
SwissprotQ9M0K49e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A3B6C9P90.0A0A3B6C9P9_WHEAT; Uncharacterized protein
TrEMBLA0A446MIF60.0A0A446MIF6_TRITD; Uncharacterized protein
STRINGTraes_2BL_03F3475CD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.15e-61myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]