PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_FC3F1F39A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 543aa    MW: 60481.4 Da    PI: 7.0198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_FC3F1F39A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18208298199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +++s+v +  +l lp  f+++h   +++++t++lede+g  ++ k+   + +++  l++GW++F+  +++k+gD+vvF+l+++ 
  Traes_2AS_FC3F1F39A.1 208 FVKHMLHSHVVQGFWLGLPSGFCNKHL--PKKDVTIVLEDEDGHNYDAKY--LGAKQG--LSGGWRGFALNHDIKVGDVVVFQLVSSA 289
                            899********************9995..34789****************..888877..9**********************98766 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  Traes_2AS_FC3F1F39A.1 290 KF--KVYILRA 298
                            66..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-21202299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-24203299IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-26206297No hitNo description
PfamPF023625.0E-17208298IPR003340B3 DNA binding domain
SMARTSM010193.9E-20208299IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394208299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAIDQSLKRK RGRPAGGGGS PSVNKSQRDK MVMEQKMALV HQRLALLDSE SDKDADVVPT  60
ATMDDKLAAV VVDQQPVVIN FGDTDDEDEY VPLRIVRPRR LDSEQEKLLD VSQTHNAQGT  120
DTAKKKRGRL VKAQSNMEQK LKLSTPRLAL VESGCSNSSK SDIEEDLVPM VAAVNCKKTC  180
ARVQGNFGSA MERAEEVLVK LPAEHPSFVK HMLHSHVVQG FWLGLPSGFC NKHLPKKDVT  240
IVLEDEDGHN YDAKYLGAKQ GLSGGWRGFA LNHDIKVGDV VVFQLVSSAK FKVYILRANN  300
FTITDGALGL LCLEAGKEKI LKEERSIDVK SKENPKFRSD GSNPASDSIT DGIRFSDTAI  360
GFDDVKSFSN FNIIVDGLVI DCKFPDHLRK TYYELCCAQE SFLHKDLLKQ INLTLAVGVI  420
METINIAEGI RACKAHASSH EDFVIWKKTL EAFELLGMNV KFLLKRIDDL LSLSALPRDP  480
AEHEGYKEMK LERARAGAKM KELESMMSSV KDTLKKMDVE MEEMESSAKR TDEMLRRLAT  540
APW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-113HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163752.10.0B3 domain-containing protein Os01g0234100-like isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A3B6ATM50.0A0A3B6ATM5_WHEAT; Uncharacterized protein
TrEMBLA0A446KPY80.0A0A446KPY8_TRITD; Uncharacterized protein
STRINGTraes_2AS_FC3F1F39A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]