PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_FA70DB417.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 207aa    MW: 22645.6 Da    PI: 4.9918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_FA70DB417.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.6e-06102122323
                            ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                            C  Cgk Fs++ +L  H+++H
  Traes_2AS_FA70DB417.1 102 CRECGKLFSSWRSLFGHMKSH 122
                            ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-62043IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5332148IPR007087Zinc finger, C2H2
SMARTSM003550.0622143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-42144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118100123IPR007087Zinc finger, C2H2
SMARTSM003550.018100122IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.23E-5101123No hitNo description
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
PfamPF139121.4E-5102122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-4102122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDAVGELAAA GMHHHHHHHH HRCKVCGKGF SCGRSLGGHM RSHISLGEAL PEADDELIRR  60
SXSANGAVGY GLRENPKKTR RLSDFADEEE DQGGDGGAQR ACRECGKLFS SWRSLFGHMK  120
SHAPGAARDH DEYDEADGDV DLLGEEEYSF AAEAEAEAEA EAEKEEEEEE EEMEPAPMEP  180
LVPAPVAVMA APPRRRRRSM RVAAPAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182857.14e-73zinc finger protein ZAT9-like
TrEMBLA0A3B6AV947e-89A0A3B6AV94_WHEAT; Uncharacterized protein
STRINGTraes_2AS_FA70DB417.11e-145(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-17C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]