PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_EC0A70BB3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 96aa MW: 9743.98 Da PI: 7.5811 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00053 | 15 | 37 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H r+H Traes_2AS_EC0A70BB3.1 15 HQCSLCHRTFPSGQALGGHKRLH 37 79*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.09E-6 | 12 | 39 | No hit | No description |
Pfam | PF13912 | 2.2E-12 | 14 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 17 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
GDEASGGAPV EAKVHQCSLC HRTFPSGQAL GGHKRLHYEG GAAGAGTGKD KEAAKAKAAA 60 LLRDFDLNLP ASGVAGDEAE SPPPEAKRAR LMLLAI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153235.1 | 1e-50 | zinc finger protein AZF1-like | ||||
TrEMBL | A0A3B6AW61 | 1e-59 | A0A3B6AW61_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KTM4 | 1e-59 | A0A446KTM4_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AS_EC0A70BB3.1 | 6e-62 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-12 | salt tolerance zinc finger |
Publications ? help Back to Top | |||
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