PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_D0B21BF981.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 262aa    MW: 28305.7 Da    PI: 4.9182
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_D0B21BF981.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS175.83.3e-541126181304
                    GRAS  81 lkl.fsevsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..... 153
                             + l f+e+sP+  f+h++aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++     
  Traes_2AS_D0B21BF981.2  11 TALrFQELSPWSSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSpDDTPHLSITTVVSAAPSaptsa 97 
                             3336*********************987766667778999***********************9899**********9988889998 PP

                    GRAS 154 skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                              ++ ++e+g+r++kfA+ +gvpf+f++++++ +l++l+l++L++++      +aVn++ +l  ++  ++  +  r ++   +++l+P
  Traes_2AS_D0B21BF981.2  98 VQRVMREIGQRMEKFARLMGVPFRFRAVHHSgDLAELDLDSLDLREggaTTGIAVNCMNSLRGVV--PGGARR-RGAFAASLRRLEP 181
                             9999************************8888**************6555568***********9..555555.89*********** PP

                    GRAS 237 kvvvvveqeadh.nse.............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                             +vv+vve+ead+   +              Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e
  Traes_2AS_D0B21BF981.2 182 RVVTVVEEEADLvA-TdadasdeggdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASE 261
                             *********99953.34799999*****9*************************************.***********8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.4361262IPR005202Transcription factor GRAS
PfamPF035141.1E-5111261IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEA AAASSEPQRF HILDLSNTFC  60
TQWPTLLEAL ATRSPDDTPH LSITTVVSAA PSAPTSAVQR VMREIGQRME KFARLMGVPF  120
RFRAVHHSGD LAELDLDSLD LREGGATTGI AVNCMNSLRG VVPGGARRRG AFAASLRRLE  180
PRVVTVVEEE ADLVATDADA SDEGGDTEAA FLKVFGEGLR FFSAYMDSLE ESFPKTSNER  240
LALERGAGRA IVDLVSCPAS ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-911262158402Protein SHORT-ROOT
5b3h_B2e-911262104348Protein SHORT-ROOT
5b3h_E2e-911262104348Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709790.0AK370979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176974.10.0protein SHORT-ROOT 1
SwissprotA2YN561e-157SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A2X0S3390.0A0A2X0S339_WHEAT; Uncharacterized protein
TrEMBLA0A3B6D9Z10.0A0A3B6D9Z1_WHEAT; Uncharacterized protein
TrEMBLA0A453B6Q80.0A0A453B6Q8_AEGTS; Uncharacterized protein
STRINGTraes_2AS_D0B21BF981.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.14e-68GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]