PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_8C5E619C6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 361aa    MW: 39991.9 Da    PI: 10.3033
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_8C5E619C6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.11.5e-3457156297
                 DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 
                            lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ + sg  +sf+++h+
  Traes_2AS_8C5E619C6.1  57 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRGSGAAFSFRSPHE 144
                            79************************99877778***************************************8889*********** PP

                 DUF573  86 qkifelskkiWg 97 
                            q ife+++ iW+
  Traes_2AS_8C5E619C6.1 145 QAIFEIARNIWR 156
                            ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-3158155IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRTATTTPRT GTSPAPRSSN LPIRASPTPP PPPPPPCSPX XXXXXXQASS GGERRPLFQR  60
LWTEEDEIVI LRGFAEFTAA RGTAFASHQY DTDPFYEDMR RRLQLDFSKS QLVEKLRRLK  120
RKYRNCVSRL RGSGAAFSFR SPHEQAIFEI ARNIWRPTNK HGRDPSADSD DEEAVVAAAA  180
VAATPVPANT SPNGEVKSPS GRQRRRRRSV ESAAPSAPAA VPATILVQPP QPVQVQVPVS  240
VPVKMDDSLP ALPQAPMPVT VTMEGSEPLR FPVMSPQSGI VDVEKNFLTP MFKEMIHAVI  300
NMGSSPFGMK LPEPPHGLPM EGEKWRNQRI LELEVYLKRI ELLQDQVKAT LEELKSSTPR  360
T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767670.0AK376767.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135H11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174717.10.0probable transcription factor At5g28040
TrEMBLW5C5R20.0W5C5R2_WHEAT; Uncharacterized protein
STRINGTraes_2AS_8C5E619C6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-35DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]