PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_7A127A218.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 208aa MW: 23991 Da PI: 6.1769 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.8e-16 | 120 | 200 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ l +p +f eh +++ ++l de+ ++++v + r +s++ l +GW+eF+ +n+L egD +vF+l++r f +v +fr Traes_2AS_7A127A218.1 120 QSLTSLHIPAQFSMEHLP--DNGMRMVLVDEEEEEFKVSY--RPHSSS--LVAGWSEFAIDNELVEGDCLVFQLIKRALF--KVYIFR 199 4445589*****999953..36899***************..999988..889**********************98888..999999 PP S CS B3 99 k 99 + Traes_2AS_7A127A218.1 200 A 200 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.69E-21 | 107 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-20 | 108 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.603 | 110 | 201 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.56E-21 | 112 | 199 | No hit | No description |
SMART | SM01019 | 1.1E-15 | 114 | 201 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 118 | 200 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAVK PKLKRKAPKP WDAADDAPPR 60 RSGRIATLPE QPDYRDNLGT GKPRQQKEVK PDHAYAIAKA EELQDELGSD YPTFVKPMPQ 120 SLTSLHIPAQ FSMEHLPDNG MRMVLVDEEE EEFKVSYRPH SSSLVAGWSE FAIDNELVEG 180 DCLVFQLIKR ALFKVYIFRA SSYYENEH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374346 | 0.0 | AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158478.1 | 1e-144 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 2e-70 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A3B6ATC1 | 1e-152 | A0A3B6ATC1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AS_7A127A218.1 | 1e-153 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-28 | B3 family protein |
Publications ? help Back to Top | |||
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