PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_6269D889E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 324aa    MW: 35195.1 Da    PI: 10.6186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_6269D889E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.5e-28120180259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            dDg++WrKYGqK++ g+++pr+YYrCt++   gCp++k+v+r+++dp +++i+Y+g+H+++
  Traes_2AS_6269D889E.1 120 DDGHSWRKYGQKDILGARHPRAYYRCTHRnsqGCPATKQVQRADQDPALFDIVYHGQHTCR 180
                            7***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-28117180IPR003657WRKY domain
SuperFamilySSF1182901.44E-24118180IPR003657WRKY domain
SMARTSM007746.8E-39119181IPR003657WRKY domain
PROSITE profilePS5081121.85120177IPR003657WRKY domain
PfamPF031064.3E-27120180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MESVEGNGAG RGNLQLVVSE LCRVQELVRQ LELHLHAPDA SIDLCRALTA EIFALTDRSI  60
GFVAAAHFPD APTTPSSTSS SLSGVSDQPF RTNTKKRKAT TRWTSQVRVS AAGGAEWPGD  120
DGHSWRKYGQ KDILGARHPR AYYRCTHRNS QGCPATKQVQ RADQDPALFD IVYHGQHTCR  180
PGGGGGGXXX XXXXXXXPQP ARGEPAAEPQ SRPDRGRGPR RPEQHLSLTA VDGLACGVRL  240
QRWPDHVTVP GAGRRVHGVA AGRRPPGGGV GAHSRVGPEH GLPFRVRPDL RPWCAQLLHV  300
RTTNRASKWN YMTLPSPCLS LVRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21120180969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0285490.0JX028549.1 Triticum aestivum transcription factor WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187901.11e-115probable WRKY transcription factor 41
TrEMBLA0A3B6AVG61e-132A0A3B6AVG6_WHEAT; Uncharacterized protein
TrEMBLA0A446KRB91e-132A0A446KRB9_TRITD; Uncharacterized protein
STRINGTraes_2AS_6269D889E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-29WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]