PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_53BFA14C7.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 479aa    MW: 52924.6 Da    PI: 6.3269
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_53BFA14C7.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34611532103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y+++++++l+ +isw   gnsfvv+++++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g
  Traes_2AS_53BFA14C7.2  61 FLSKTYNLVSEPQLDGVISWGPAGNSFVVWNPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEGFLRG 139
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +k+ll++i r++s+
  Traes_2AS_53BFA14C7.2 140 SKHLLKTIVRRRSS 153
                            **********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.49E-3357150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-3757150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5557150IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-176184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-1799111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-17112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDAALLPEPK LEMMLQQQPS PAGHYAALDH HLVPPPPALV VPCEPPRPLE ALLQGPQLPP  60
FLSKTYNLVS EPQLDGVISW GPAGNSFVVW NPSTFARDVL PHNFKHNNFS SFVRQLNTYG  120
FRKVHADRWE FAHEGFLRGS KHLLKTIVRR RSSPTQQSSL QPGSSIFRKI QSSSSGEPTL  180
DPELRSLRRE KNALLQEVAR LKEEHNQTIE HLNALNQRLE TAEDRQKQVV SFLAKLLRNP  240
DFLRQLKMHR ERRDGIDSAR VKRKFLKHVP HGSRNSGDSS SPRTAESTCS TAHPVAHDAI  300
ADLQSFLLKD TDLSDGMLPG NFGLDGVEAS DDIGALVQVF DQQDLGTGAE LLGIPPVPGA  360
AHCQDPTFGR SKGKNVMCPG GTDGTSSQAD CLVPLPGNVG KLMDADGEQI WGADTFFQSS  420
CSGTSQQTYV SDPYLMEIPD KPERFWELDF DALDDGDLHL DKCVIGDPAL EQHRGNMKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-265315311123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4460280.0HM446028.1 Hordeum vulgare subsp. vulgare heat shock factor A3 (HsfA3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146599.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3B6AWY60.0A0A3B6AWY6_WHEAT; Uncharacterized protein
STRINGTraes_2AS_53BFA14C7.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.18e-71heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]