PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_099955797.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 105aa MW: 11032 Da PI: 7.6281 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Traes_2AS_099955797.1 25 YECSFCKRGFTNAQALGGHMNIH 47 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.07E-7 | 23 | 51 | No hit | No description |
Pfam | PF13912 | 7.4E-6 | 24 | 49 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.009 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.323 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 25 | 49 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MEGGDFHKSG SPEDTGGSRR APAYYECSFC KRGFTNAQAL GGHMNIHRKD RGGSGGKSRG 60 AAPPAAGQQD GAGGNQAHLG LTLGRDGDSR EDVDLELRLG HYPYN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947976 | 2e-32 | EU947976.1 Zea mays clone 368057 mRNA sequence. | |||
GenBank | EU975179 | 2e-32 | EU975179.1 Zea mays clone 483468 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228158.1 | 5e-56 | uncharacterized protein LOC104581666 | ||||
TrEMBL | A0A3B6AU87 | 5e-70 | A0A3B6AU87_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KQK7 | 5e-70 | A0A446KQK7_TRITD; Uncharacterized protein | ||||
TrEMBL | M8AC43 | 5e-70 | M8AC43_TRIUA; Transcriptional regulator TAC1 | ||||
STRING | Traes_2AS_099955797.1 | 8e-71 | (Triticum aestivum) | ||||
STRING | TRIUR3_25222-P1 | 8e-71 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6363 | 32 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 5e-14 | C2H2 family protein |
Publications ? help Back to Top | |||
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