PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_E8C400686.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 104aa MW: 12029.7 Da PI: 10.1084 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.6e-17 | 17 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2AL_E8C400686.1 17 RGNFSDEEERLIITLHAGLGNK-WATIATHLE-GRTDNEIKNYWNTH 61 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-10 | 1 | 23 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 3.903 | 1 | 11 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.13E-21 | 1 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.49 | 12 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-15 | 16 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-15 | 17 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.91E-11 | 19 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 24 | 63 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
KSCRLRWTNY LRPDIKRGNF SDEEERLIIT LHAGLGNKWA TIATHLEGRT DNEIKNYWNT 60 HIRKKLLRMG VDPVTHQQLP PDQSHHHLNA TSIAHHPGAL LWAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-19 | 1 | 66 | 43 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156904 | 4e-80 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT054398 | 4e-80 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 4e-80 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169252.1 | 4e-67 | transcription factor MYB34-like | ||||
Swissprot | Q9S9Z2 | 1e-39 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3B6B402 | 6e-71 | A0A3B6B402_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LF95 | 6e-71 | A0A446LF95_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_E8C400686.1 | 2e-72 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 1e-42 | myb domain protein 107 |
Publications ? help Back to Top | |||
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