PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2AL_B518C11E4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 151aa MW: 17403.1 Da PI: 10.2254 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 5 | 99 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 k+lt+sdv++ gr+vlpk+ ae++ + ++ + l++ed + +W++k++y ++ks++yvl+ + eF k ++L + D+++++ ++ Traes_2AL_B518C11E4.1 5 KELTNSDVGNIGRIVLPKRDAEANlpALLERDGLILKMEDmRLPVTWNFKFRYwpNNKSRMYVLE-STGEFTKHHNLATQDTFIIY--KS 91 889***********************777778888999995555*********89999999**99.9******************9..55 PP .SEE..EE CS B3 88 .sefelvv 94 +++++ v Traes_2AL_B518C11E4.1 92 lESGKFIV 99 57776665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.0E-7 | 3 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-21 | 3 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-16 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.73E-18 | 5 | 100 | No hit | No description |
Pfam | PF02362 | 4.8E-12 | 5 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MVVWKELTNS DVGNIGRIVL PKRDAEANLP ALLERDGLIL KMEDMRLPVT WNFKFRYWPN 60 NKSRMYVLES TGEFTKHHNL ATQDTFIIYK SLESGKFIVR GEKVTGQCAT LICPECKEQG 120 RINNRQCGFT RNLHARKRRS MPAVFTSAPS Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 1e-31 | 5 | 90 | 15 | 100 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 1e-31 | 5 | 90 | 15 | 100 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192022.1 | 1e-94 | putative B3 domain-containing protein Os04g0676650 isoform X1 | ||||
Refseq | XP_020192023.1 | 1e-94 | putative B3 domain-containing protein Os04g0676650 isoform X2 | ||||
Swissprot | Q7XKC4 | 6e-55 | Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650 | ||||
TrEMBL | A0A3B6B8P6 | 1e-107 | A0A3B6B8P6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LMU6 | 1e-107 | A0A446LMU6_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_B518C11E4.1 | 1e-111 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11817 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24650.1 | 2e-34 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|