PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_B05A4E316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 205aa MW: 21787.7 Da PI: 10.1046 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.2 | 6e-34 | 53 | 139 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssas 83 ag+ + +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c ++++ s ++ Traes_2AL_B05A4E316.1 53 AGAAKGAKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssapSTAAVSLLGK 139 56667789********************************************************88888544432221122222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-30 | 58 | 147 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.413 | 59 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MASRDAATFQ LYRPMAMPTA TPMSQTMAMP GFSSAEAADD AVVAVPVPAP RKAGAAKGAK 60 DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTVE WLLRQAEPSI LAATGSGTTP 120 AVFSCSSAPS TAAVSLLGKR PREEHEHEAA PSFWEALQAR PVPWGLSPSL EAQAYASSVA 180 QGHHHHLNLL SALSGASRRP EEESR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359408 | 0.0 | AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178782.1 | 1e-146 | transcription factor TCP7-like | ||||
TrEMBL | A0A3B6B207 | 1e-146 | A0A3B6B207_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_B05A4E316.1 | 1e-146 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 1e-36 | TCP family protein |
Publications ? help Back to Top | |||
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