PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_ABBE06B44.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 556aa MW: 63174.1 Da PI: 9.5083 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.7 | 3.3e-22 | 68 | 158 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+++A++vGF vr+ ++k ++ + +++++Cs +g+r+e+ k+ + +++r+r++tr+gC+a++ vk+ + ++++++++ ++Hn Traes_2AL_ABBE06B44.1 68 FYKAFAHRVGFGVRVGQQKVV--DNVVESKRYMCSSQGFRSEKVKRnvkAANKKRKREVTRCGCDAHIYVKRCSGNTYKIHSMIEQHN 153 9***************99888..889****************9999787788999********************************* PP FAR1 87 Helap 91 H ++p Traes_2AL_ABBE06B44.1 154 HGFVP 158 *9875 PP | |||||||
2 | FAR1 | 74.5 | 2.3e-23 | 201 | 291 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA+++GF+vr+ ++k +++ + ++f+Cs+eg+r+++ k+ +e+++r+ ++tr+gC+a+++vk + ++++v++l ++Hn Traes_2AL_ABBE06B44.1 201 EFYKSYARHCGFKVRVGQHKLL-NKEVVQFKRFMCSREGFRSDKGKDpsSERKKRNVKVTRCGCNAHIVVKWCSGNTYKVSSLIEHHN 287 6****************99887.777799****************9987888889999****************************** PP FAR1 87 Hela 90 H l+ Traes_2AL_ABBE06B44.1 288 HGLV 291 *986 PP | |||||||
3 | FAR1 | 73.6 | 4.3e-23 | 339 | 431 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+++GFsvr+ + k +n+ + +++f+Cs+eg+r+e+ +++r+ r++tr+gC+a++ vk+ +d+k+++t+ ++H Traes_2AL_ABBE06B44.1 339 EFYKSYAHHCGFSVRVGQRKLL-NNEVVQWKRFMCSREGFRSEKCMGvddPSRKRKVRKVTRCGCDARIIVKRCTDNKYKITSWIEHH 425 6****************97766.8999****************9887777889999******************************** PP FAR1 86 nHelap 91 nH ++p Traes_2AL_ABBE06B44.1 426 NHGFVP 431 **9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.6E-20 | 68 | 158 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 8.4E-21 | 201 | 291 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 9.2E-21 | 339 | 431 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MESVTIVQAQ PFAGINSPLP LDEGRLGTPE RDATSMPQPC STSTSESAEE WKPALGMTFE 60 GLEAVEAFYK AFAHRVGFGV RVGQQKVVDN VVESKRYMCS SQGFRSEKVK RNVKAANKKR 120 KREVTRCGCD AHIYVKRCSG NTYKIHSMIE QHNHGFVPPD KLHLIRSNRG ASEKEKVIPE 180 CDEALRPSLG MAFEGLSSAE EFYKSYARHC GFKVRVGQHK LLNKEVVQFK RFMCSREGFR 240 SDKGKDPSSE RKKRNVKVTR CGCNAHIVVK WCSGNTYKVS SLIEHHNHGL VLPDKVTKSK 300 RRVSEKAKNK LSSSLAPECD EALKPSVGMV FEDIGSVEEF YKSYAHHCGF SVRVGQRKLL 360 NNEVVQWKRF MCSREGFRSE KCMGVDDPSR KRKVRKVTRC GCDARIIVKR CTDNKYKITS 420 WIEHHNHGFV PPDKCHLIRS NRQLSDKVKP TVSTHCKAST GTSQANKPDH VSEGRSDNVG 480 CTKRDLQKYH HDLCSKIKNE DAQIFVAQLC RKQQEDSAFF FDCDVDDQGM LVHVFWADAT 540 SRKNYIYFSD MLTFDC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161160.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A446L7R1 | 0.0 | A0A446L7R1_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_ABBE06B44.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 1e-28 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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