PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_9A4A7514E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 629aa MW: 71775.6 Da PI: 8.2437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_9A4A7514E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.3	1.1e-17	11	104	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 Y+ +Ak++GFs+r+++++ + + t+r fvC + g++ + + k++r+r+++r+gC+a l++ ++ +w+vt +++ Traes_2AL_9A4A7514E.1 11 LYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFDdGAKQQRNRKSSRCGCQAYLRIGRDAgagGLEWRVTGFSNY 98 79**********9998877356667999*****998887664678899*************99877789***** PP FAR1 85 HnHela 90 HnHel Traes_2AL_9A4A7514E.1 99 HNHELL 104 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-15	11	104	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-16	227	313	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.977	503	539	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-8	511	538	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	514	541	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
RFLTHEAAYE LYSGFAKQCG FSIRRHRTEG KDGVGKGLTR RYFVCHRAGN TPAKPFDDGA 60 KQQRNRKSSR CGCQAYLRIG RDAGAGGLEW RVTGFSNYHN HELLRQDEVR FLPAYRVISE 120 SDRDRILVFA KSGITVQQMM RIMELEKCVQ PGSLPFTEKD VRNLIQSFRR FEQEEESVDL 180 LQMCRNVKEK DPNFKYDFTK DANNCVENIA WSYASSIQSY EVFGDAVVFD TTHRLTSIDM 240 TLGIWIGMNN HGMPCFFSCV LLREGNLQSF TWALQVFLNF MNRKAPQTIL TDQNMYLKEA 300 VQKELPNTKH ALSIGLIASR FLSWFNAVLG RHYNDWENEF YRLHNMESTM DFDLGWSDMV 360 SCYGLHGNRH IASLFASRKL WASPYLRGHF LAGLAALPGI SKIKDFIQRL LSAQTCLSCF 420 IEQVAVVVDY KDQAGEQQIV QQNSENTILK TAAPVEGHAA AVFTPYAFYK LQDELVEAAH 480 YAYFHLEGNA FLVRHHTKTD GGCNVTWNQK EELLSCSCQM FESSGILCRH ALRVLTTLNY 540 SQIPDHYLPV RWHRTQPQPS KSLIGAPDHG RSYERVKALQ SMVSVLVSEA GKSEERMDLA 600 TQEVSVLLSR IRQQPVVANV SGDGVRQQR

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

RFLTHEAAYE LYSGFAKQCG FSIRRHRTEG KDGVGKGLTR RYFVCHRAGN TPAKPFDDGA  60
KQQRNRKSSR CGCQAYLRIG RDAGAGGLEW RVTGFSNYHN HELLRQDEVR FLPAYRVISE  120
SDRDRILVFA KSGITVQQMM RIMELEKCVQ PGSLPFTEKD VRNLIQSFRR FEQEEESVDL  180
LQMCRNVKEK DPNFKYDFTK DANNCVENIA WSYASSIQSY EVFGDAVVFD TTHRLTSIDM  240
TLGIWIGMNN HGMPCFFSCV LLREGNLQSF TWALQVFLNF MNRKAPQTIL TDQNMYLKEA  300
VQKELPNTKH ALSIGLIASR FLSWFNAVLG RHYNDWENEF YRLHNMESTM DFDLGWSDMV  360
SCYGLHGNRH IASLFASRKL WASPYLRGHF LAGLAALPGI SKIKDFIQRL LSAQTCLSCF  420
IEQVAVVVDY KDQAGEQQIV QQNSENTILK TAAPVEGHAA AVFTPYAFYK LQDELVEAAH  480
YAYFHLEGNA FLVRHHTKTD GGCNVTWNQK EELLSCSCQM FESSGILCRH ALRVLTTLNY  540
SQIPDHYLPV RWHRTQPQPS KSLIGAPDHG RSYERVKALQ SMVSVLVSEA GKSEERMDLA  600
TQEVSVLLSR IRQQPVVANV SGDGVRQQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248760	0.0	AK248760.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2n05, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180634.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A446L4Z5	0.0	A0A446L4Z5_TRITD; Uncharacterized protein
STRING	Traes_2AL_9A4A7514E.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15171	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]