PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_71DE02042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20314.1 Da PI: 8.7124 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 194.1 | 6.5e-60 | 1 | 187 | 8 | 167 |
YABBY 8 eqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee.................... 70 eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl++ ++l+ + + Traes_2AL_71DE02042.1 1 EQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLlpataNQLPFSP--------Sllsptspasphglldemssf 80 79****************************************99876333333333333........233335556888988888888 PP YABBY 71 .....lleelkveeenlksnvekeesastsvssekl...senedeevprvpp...virPPekrqrvPsaynrfikeeiqrikasnPdi 147 l +++ + + + + +++++a ++ +++++ ++ ++e+p+ + + PekrqrvPsaynrfik+eiqrika+nPdi Traes_2AL_71DE02042.1 81 qapssL-LTDQASPNVSSITSSSNSCAINTPAMSMMpppEKPAQRETPQRKSaasGTKHPEKRQRVPSAYNRFIKDEIQRIKANNPDI 167 766632.233333333333444445555555566668885666666665544222689****************************** PP YABBY 148 shreafsaaaknWahfPkih 167 +hreafsaaaknWahfP+ih Traes_2AL_71DE02042.1 168 THREAFSAAAKNWAHFPHIH 187 *******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.5E-66 | 1 | 187 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.01E-8 | 129 | 183 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-5 | 136 | 184 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
EQLCYVHCNF CDTILAVGVP CSSLFKTVAV RCGHCANLLS VNLRNLLLPA TANQLPFSPS 60 LLSPTSPASP HGLLDEMSSF QAPSSLLTDQ ASPNVSSITS SSNSCAINTP AMSMMPPPEK 120 PAQRETPQRK SAASGTKHPE KRQRVPSAYN RFIKDEIQRI KANNPDITHR EAFSAAAKNW 180 AHFPHIH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376350 | 0.0 | AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167170.1 | 1e-133 | protein YABBY 5-like | ||||
Swissprot | Q01JG2 | 4e-97 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 4e-97 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A3B6B3N8 | 1e-134 | A0A3B6B3N8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LAT3 | 1e-134 | A0A446LAT3_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_71DE02042.1 | 1e-135 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 5e-42 | YABBY family protein |
Publications ? help Back to Top | |||
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