PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_43491B9E0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 295aa    MW: 31507.7 Da    PI: 8.9007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_43491B9E0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-17123172255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++++g
  Traes_2AL_43491B9E0.1 123 TYHGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVATLAIKG 172
                            69****998.**********843...6*******************99887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.6E-33123186IPR001471AP2/ERF domain
PfamPF008475.1E-11123172IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-20123181IPR016177DNA-binding domain
PROSITE profilePS5103221.904123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-31123181IPR001471AP2/ERF domain
CDDcd000183.74E-28124182No hitNo description
PRINTSPR003671.0E-9124135IPR001471AP2/ERF domain
PRINTSPR003671.0E-9146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
AVLSKKTLCS PAGREIFPYA WVQISALPIV FPRNFLSTAP RRPLRGRTIK PRYSPPTSTR  60
HSTTLPCPPL PTYSSTTTAA AMDDIAEPGS PTSPTATSSS SSSSSSSSVA ANKRPRKDSR  120
HPTYHGVRMR SWGKWVSEIR EPRKKSRIWL GTFATAEMAA RAHDVATLAI KGRAAHLNFP  180
DLAHLLPRPA SAAPKDVQAA AILAASADFP CGASANAKSP DSASDASAVS PPPPPAPHAE  240
PVQDPEDALF DLPDLLLDLR YEASAGLPCA SSWVVDEDIV GAGVFRLEEP LLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-161211801272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164576.11e-101ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3B6B4P91e-148A0A3B6B4P9_WHEAT; Uncharacterized protein
TrEMBLA0A446LD191e-148A0A446LD19_TRITD; Uncharacterized protein
STRINGTraes_2AL_43491B9E0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]