PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_232DE3B52.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 141aa MW: 15822 Da PI: 8.048 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.5 | 3.2e-11 | 17 | 96 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e GF +r ks+ + ++ +C +e r k +++ + r++C a +++ ++kd+ w++++ + HnH+l+ Traes_2AL_232DE3B52.1 17 DFYNLYSWEKGFGIRYGKSRLN-------ISRTKCMQEIVRGCVGKP---IVENTRSCRCECPALIRLLRTKDNGWYIAEHRDGHNHALS 96 6****************98887.......345689999999999887...889999********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-7 | 17 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MVPKIGTSFD TLGEAYDFYN LYSWEKGFGI RYGKSRLNIS RTKCMQEIVR GCVGKPIVEN 60 TRSCRCECPA LIRLLRTKDN GWYIAEHRDG HNHALSQTYG QTIHCPTTVS AEARICTMDT 120 SAVVNEGQLV SGLGALNWKD E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX295577 | 3e-50 | JX295577.2 Aegilops tauschii chromosome 1Ds prolamin gene locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196226.1 | 8e-54 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A446S781 | 2e-72 | A0A446S781_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_232DE3B52.1 | 1e-103 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 2e-10 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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