PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_1B22EA0AD.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 228aa MW: 24617.7 Da PI: 9.3596 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 118.4 | 9e-37 | 1 | 217 | 175 | 374 |
GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..........adhnses 252 +fef+ +v + ed + e+++++p +++Vnlv+ + + s + ++ L ++sl+P +v ++++ ++s+s Traes_2AL_1B22EA0AD.2 1 RFEFEGVVNNGPEDGRHERIKTDPAATVVVNLVFPAAQNARASSWDP---RSALAHIRSLNPSLVFLIDKVdegsgggkgaGRCGSAS 85 59****9999************************8877764443333...58***************99742334444442233666* PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre....rhetlekWrerleeaGFkpvplsekaakq 336 +l rf+ l+yy+a+f+sl++ lp++s eri +Er lg ei+++ a ++r + + + W+erle+aGF+ ++ls+++++q Traes_2AL_1B22EA0AD.2 86 LLPRFAANLRYYAAVFESLHECLPADSAERIAIERDHLGVEISDAMASLDRRRHAgdraADQMSRGWKERLESAGFEDARLSSRTVSQ 173 ***********************************************9999886511114455678********************** PP GRAS 337 aklllrkvk.sdg...yrveee..sgslvlgWkdrpLvsvSaWr 374 aklll++ + + g +rv e +++ lgW+dr+L++++aWr Traes_2AL_1B22EA0AD.2 174 AKLLLKMKSgGCGgggFRVTEAgdGKAMALGWRDRALITATAWR 217 *****98664333344***9875245556**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.288 | 1 | 191 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-34 | 1 | 217 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
RFEFEGVVNN GPEDGRHERI KTDPAATVVV NLVFPAAQNA RASSWDPRSA LAHIRSLNPS 60 LVFLIDKVDE GSGGGKGAGR CGSASLLPRF AANLRYYAAV FESLHECLPA DSAERIAIER 120 DHLGVEISDA MASLDRRRHA GDRAADQMSR GWKERLESAG FEDARLSSRT VSQAKLLLKM 180 KSGGCGGGGF RVTEAGDGKA MALGWRDRAL ITATAWRPCR RSVGKNEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-13 | 85 | 218 | 258 | 380 | Protein SCARECROW |
5b3h_A | 4e-13 | 85 | 218 | 257 | 379 | Protein SCARECROW |
5b3h_D | 4e-13 | 85 | 218 | 257 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606458 | 2e-34 | AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence. | |||
GenBank | AP014960 | 2e-34 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 2e-34 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173956.1 | 1e-146 | scarecrow-like protein 23 | ||||
TrEMBL | A0A3B6B0S6 | 1e-162 | A0A3B6B0S6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L4L4 | 1e-162 | A0A446L4L4_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_1B22EA0AD.2 | 1e-165 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11649 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-16 | RGA-like 2 |
Publications ? help Back to Top | |||
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