PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_05ECC440C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 977aa    MW: 107830 Da    PI: 6.0535
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_05ECC440C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23148249199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F
  Traes_2AL_05ECC440C.2 148 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLF 234
                            89*********************999*****9555555.49*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++ +l+v+v+r+
  Traes_2AL_05ECC440C.2 235 I--RDEKSQLLVGVRRA 249
                            *..4577778*****97 PP
2Auxin_resp113.61.9e-37274356183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaas++s F+++YnPr+s+s Fvv+v++++ka +++ svGmR+ m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+
  Traes_2AL_05ECC440C.2 274 AAHAASSGSSFTIYYNPRTSPSPFVVPVARYNKANYIQQSVGMRMAMMFETEESSKRRYTGTIVGVSDSDPMRWPNSKWRNLQ 356
                            79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-44139277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-40141262IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-21147248No hitNo description
PROSITE profilePS5086312.83148250IPR003340B3 DNA binding domain
SMARTSM010197.1E-23148250IPR003340B3 DNA binding domain
PfamPF023623.6E-21148249IPR003340B3 DNA binding domain
PfamPF065073.0E-33274356IPR010525Auxin response factor
PfamPF023093.4E-10834960IPR033389AUX/IAA domain
PROSITE profilePS5174525.301873957IPR000270PB1 domain
SuperFamilySSF542777.36E-9890952No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MAAASQEKQQ QLPTFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG  60
SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL  120
QPVNSETDVF PIPSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS  180
MQPPNQELIV RDLHDNMWTF RHIYRGQPKR HLLTTGWSLF VGAKRLKAGD SVLFIRDEKS  240
QLLVGVRRAT NQQTALSSSV LSTDSMHIGV LAAAAHAASS GSSFTIYYNP RTSPSPFVVP  300
VARYNKANYI QQSVGMRMAM MFETEESSKR RYTGTIVGVS DSDPMRWPNS KWRNLQIEWD  360
EHGYGERPER VSIWDIETPE NTIVFPSASL NSKRQCLPGY GVPGLDIASV NMSPFQRAPG  420
NPYVPGLDIA SVNMSPFQRA PGNPYGNLQH MPAVGSELAM MMFLNQSGQN IGTPLSCHQS  480
SYSSIIQNVK QNYMPPSTFG HPIGSIKPES MPSNEVQQQQ QLHAPKMQRG DSESCEVHPA  540
TDSVSASELH VAGREPRNTD KYPSQSISEQ NGKGEPRVKP RRSKKGSSRK TISENSELSS  600
APSQICDDQL HVSEAELISC DTKNVNCGNN EGSSGALTHG DFAGQLQCQQ VEQNELVSPP  660
KLESSISPDG GKSVNSFPNQ ASFSQFFDGL DWMVQPPYYQ DSNGIQSVSA SENIFSPSAN  720
MASTINTDTL ETFQNSCLSD CFPNSIQDFV GSPDLHSLTF LSPEMQNLDV HHDGSNVPST  780
SNSYVQMSFS EDDSGNHMES MQRGMNNISS CSQPQTTEGF NLGMYSKLPS LKESQVLSLP  840
EIHNSSRGTS SCSMDAAEYS IDRNAKPMKP PVRTYTKVQK LGSVGRSIDV TRYRDYRELR  900
SAIASMFGLQ GKLEHPASSD WKLVYVDYEN DVLLVGDDPW EEFINCVRCI RILSPSEVQQ  960
MSENGMQVLN DCIQADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.02237931390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699300.0AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160868.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A446LID80.0A0A446LID8_TRITD; Auxin response factor
STRINGTraes_2AL_05ECC440C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]