PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2AL_05ADB552E.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 821aa MW: 93082.7 Da PI: 8.8426 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.8 | 5e-20 | 56 | 139 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y eY++++GF v+k++s++ +g +++tfvC+k g ++ + + r+r + +tgCka+++vk + +++wev +eleHnH++ Traes_2AL_05ADB552E.2 56 YLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNAsENHWEVVFVELEHNHPC 138 99*************99988..9999**************99887...8999*****************99***************97 PP FAR1 90 a 90 + Traes_2AL_05ADB552E.2 139 N 139 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-18 | 56 | 139 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-23 | 263 | 356 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 8.6E-5 | 533 | 576 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.384 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0064 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 821 aa Download sequence Send to blast |
MDSLQSDPYT RSSLQMQLID TSTSFETSNL DSVKHEVPTP QVGMTFETVD LAYQSYLEYG 60 YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKYNA 120 SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP 180 NQNKDFMVRS FSQSNYSIEA AAKCGKLRFA EGDVEALLVF FDKMQAQNSN FFYNWDMDDE 240 GRLKNVCWVD ARSRAAYQHF SDVVCFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG 300 DESPETFSWL FKKWLKCMND KAPEAIITTH SRPVVKAVSE VFLNTRHRYN LWHIMKELPD 360 MSGRVEDKEA ISLRMKKVVY DTITAADFER EWVEMANQYK LHDNRWLTTL FEERAKWVPA 420 YVKDAFWAGI STVRRSERLE AFFDGYITPE TTIKIFIEQF DTAMKLRSDR EAYDDFRSFQ 480 QRPQALSGLL FEEQFANAYT INIFQKFQDQ LKQLMNVTCT EVSRNGSIVT YTVTVIGKER 540 KFDYRVMYNS AEKEVWCICR SLQFKGILCS HALAVLKQEL VMLIPSKYIL DRWRKDYKCP 600 EESKETPIPP ESAKATGKGT KPENVREDKV DNLYNDGHQY FADIVEMGAT DPDAMEYVLS 660 VMKEAKEKVR RFEESRKEKR PEGNPVSSSK KGAKSAKPPS AEDVGNSTSV SAPANTAMAT 720 VAPTMMVAAA SATLAASTPM PVPSCTQMSV PPTMMAMATT SAAVPPGMFL VPMHPHMVFP 780 PFTPGLPAAV PPVAPPPAPT ANAVGVVSNP TKKRKKRKGN S |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 811 | 815 | KKRKK |
2 | 811 | 817 | KKRKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK361944 | 0.0 | AK361944.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001H06. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160302.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_020183256.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | M8AB16 | 0.0 | M8AB16_TRIUA; Protein FAR1-RELATED SEQUENCE 6 | ||||
STRING | Traes_2AL_05ADB552E.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-110 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|