PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_F40AC713C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 388aa    MW: 43745.6 Da    PI: 8.5612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_F40AC713C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.2e-0689111123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C+ Cg +F+ + +Lk+H+++H
  Traes_1DS_F40AC713C.2  89 HDCKECGARFKKPAHLKQHMQSH 111
                            56*******************99 PP
2zf-C2H218.36.3e-06117141123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + C+   C+ s+srk++L+rH+ tH
  Traes_1DS_F40AC713C.2 117 FACHvdGCPFSYSRKDHLNRHLLTH 141
                            78**********************6 PP
3zf-C2H211.40.001146171123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            + Cp   C++ Fs k n +rH    H
  Traes_1DS_F40AC713C.2 146 FMCPmeGCNRKFSIKGNIQRHVEEfH 171
                            78*******************98777 PP
4zf-C2H220.41.4e-06183207123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + Cp  +Cgk+F+  s L++H  +H
  Traes_1DS_F40AC713C.2 183 FICPeaNCGKVFKYASKLQKHEESH 207
                            78*******************9988 PP
5zf-C2H2218.7e-07274298223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            kC+  dC++sFs ksnL++Hi+  H
  Traes_1DS_F40AC713C.2 274 KCNfkDCKRSFSKKSNLHKHIKAvH 298
                            79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355113961IPR015880Zinc finger, C2H2-like
SMARTSM003550.003789111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.19189116IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-590107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-11101143No hitNo description
Gene3DG3DSA:3.30.160.601.2E-13108143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0018117141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12117146IPR007087Zinc finger, C2H2
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
SuperFamilySSF576673.73E-6144172No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6144172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.245146176IPR007087Zinc finger, C2H2
SMARTSM003550.029146171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-7179207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-5179209No hitNo description
SMARTSM003550.0022183207IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115183212IPR007087Zinc finger, C2H2
PROSITE patternPS000280185207IPR007087Zinc finger, C2H2
SMARTSM003556.5215240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217240IPR007087Zinc finger, C2H2
SMARTSM0035512243264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-7254295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.74E-8254311No hitNo description
SMARTSM003550.0048273298IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.36273303IPR007087Zinc finger, C2H2
PROSITE patternPS000280275298IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-4297326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6304330IPR007087Zinc finger, C2H2
SMARTSM003554.8304330IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280306330IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGEGDPDSGG VVGATSASTS TSTSPPPAAA APVRDIRRYK CEFCDVVRSK KRLIRDHVLE  60
HHKDEVDGLD EYNVGGGGGS APPGKEIGHD CKECGARFKK PAHLKQHMQS HSPERPFACH  120
VDGCPFSYSR KDHLNRHLLT HHGKLFMCPM EGCNRKFSIK GNIQRHVEEF HEDGPQCGGK  180
KEFICPEANC GKVFKYASKL QKHEESHVNL DYTEVICCEP GCMKTFTNVE CLKAHNQSCH  240
QYVQCDICDT KQLKKNFKRH QRMHEGSFVT ERIKCNFKDC KRSFSKKSNL HKHIKAVHEQ  300
SRPFTCGFSG CGQKFSYKHV RDNHEKSSVH VLFEGDFVEA DEQLRPHPGG RKRKPISVDT  360
FMRKRVAAPD APPACSDGTE YLRWLLSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-179323719157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-179323719157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3728170.0AK372817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3013K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566649.10.0transcription factor IIIA isoform X1
TrEMBLA0A3B5ZNN60.0A0A3B5ZNN6_WHEAT; Uncharacterized protein
STRINGTraes_1DS_F40AC713C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-92transcription factor IIIA
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]