PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DS_5EEED86AD.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 742aa MW: 82372.6 Da PI: 5.8653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.9e-11 | 2 | 33 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 vk++G+ W+tIa+ ++ gR +kqc++rw+++l Traes_1DS_5EEED86AD.2 2 VKKYGPTKWSTIAQALP-GRIGKQCRERWHNHL 33 9****************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 39 | 81 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Traes_1DS_5EEED86AD.2 39 KDAWTQEEEIRLIQAHHIYGNK-WAELSKFLP-GRTDNAIKNHWH 81 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.37 | 1 | 33 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 1 | 41 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.76E-9 | 1 | 33 | No hit | No description |
SMART | SM00717 | 0.097 | 1 | 35 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-9 | 2 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.3E-28 | 13 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.964 | 34 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 39 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-12 | 41 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 42 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MVKKYGPTKW STIAQALPGR IGKQCRERWH NHLNPGINKD AWTQEEEIRL IQAHHIYGNK 60 WAELSKFLPG RTDNAIKNHW HSSVKKKYES YRAEGLLAQF QGLPAVVYPT GSLNVDSSSA 120 MTQQNSDGSG LNVNQEVQDS SEFSQSALAN ISSSQVEQVD EPVGCHGQIH SSDGAHDSYS 180 SCQEACDTKA NDAASTSPET RHQLSISEND PDIHWQQDLS VADFDLQSEL WQDISYQSLL 240 TAPDSISADS FFSPNYPHSA CSSEVANNFE EPLYPLHTYS SSRTGTVHHQ SSATSVPPSF 300 ICSGRASQIV SSELPIVPES KEQQMTSVEE SLPIVPESKE QQLTSVEESQ PLESTTMGRE 360 GSPNHGKSVV GQKQHSEALC YEPPCFPSLE VPFVSCELIS SSDLPEYSPL GIRQLMRPSM 420 SFSTPLRLWS SPTCDRSRDD VLKSAAKSSV CTPSIMKKRQ REPPSPIPDV RLAKKMGTEK 480 DCGSSAMPST RTERSCRDAT RDDSLDLIPE NSKDIIYQGK TEDNANINTL EKGERCSTTE 540 RDTAYNLCQN GLMQVSAGIL TDRNGPNPER RKLNTPTKSF SKDIISSRSK PTELLVEKSS 600 VYINADYEYV NILADTPGIK RGLESPSAWK SPLFTNFQDG FFMSPTGTTF DALGLVKQIN 660 EQNAPALEEA HELLESGSLC NKESSDKENI KHIVIKKEHA TTNQISNVMI RMRFLEPTPC 720 HAKRKRRNFL LQQNANLECL HH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-37 | 1 | 87 | 18 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-37 | 1 | 87 | 18 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951920 | 0.0 | JF951920.1 Triticum aestivum clone TaMYB35 R1R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174664.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A3B5ZR48 | 0.0 | A0A3B5ZR48_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DS_5EEED86AD.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 3e-54 | myb domain protein 3r-4 |
Publications ? help Back to Top | |||
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