PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DS_47E2D90AC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 24103.9 Da PI: 8.6263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.8e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv v++lG ++W+ a+ g++Rt+k+c++rw +yl Traes_1DS_47E2D90AC.1 16 KGPWTENEDAQLVWFVRLLGERRWDFLAQVSGLRRTGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l++ +++++G++ W++Iar+++ gRt++++k++w++++ Traes_1DS_47E2D90AC.1 69 RGRITADEERLILSLHAEWGSR-WSRIARKLP-GRTDNEIKNYWRTHM 114 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.521 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.14E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-7 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.823 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MCNNSGGRGG AMAARKGPWT ENEDAQLVWF VRLLGERRWD FLAQVSGLRR TGKSCRLRWV 60 NYLHPGLKRG RITADEERLI LSLHAEWGSR WSRIARKLPG RTDNEIKNYW RTHMRKKAQE 120 EKMLAKKKAS SSPSSSSSST TSLTCSASPT ATSSSAATTE APQESTTTSM DDEAEQEATT 180 SASEEKKAEV VQYCSAVDMD QLWNDIAASE SYPEMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951904 | 0.0 | JF951904.1 Triticum aestivum clone TaMYB20 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156198.1 | 1e-156 | myb-related protein MYBAS2-like | ||||
Swissprot | Q4JL76 | 8e-64 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A452XPN7 | 1e-157 | A0A452XPN7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1DS_47E2D90AC.1 | 1e-158 | (Triticum aestivum) | ||||
STRING | Traes_1DS_47E2D90AC1.1 | 1e-158 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-60 | myb domain protein 59 |
Publications ? help Back to Top | |||
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