PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_0BBC3B5D3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 385aa    MW: 42767.6 Da    PI: 8.1688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_0BBC3B5D3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001394116323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+  +Cgk+F +   L++H  +H
  Traes_1DS_0BBC3B5D3.1  94 CSydNCGKTFVDVAALRKHAHVH 116
                            88889**************9887 PP
2zf-C2H220.41.4e-06121145123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            y+C+   Cgk F ++s LkrH  tH
  Traes_1DS_0BBC3B5D3.1 121 YVCQepGCGKKFVDSSKLKRHHLTH 145
                            99********************999 PP
3zf-C2H219.52.6e-06151175123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            ++Cp   Cgk Fs   nL+ H++tH
  Traes_1DS_0BBC3B5D3.1 151 FVCPhpGCGKAFSLDFNLRAHLKTH 175
                            89**********************9 PP
4zf-C2H212.40.00046181205123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + Cp   Cgk+F++   Lk Hi+tH
  Traes_1DS_0BBC3B5D3.1 181 HICPfpACGKRFTSDFKLKCHIKTH 205
                            5799999*****************9 PP
5zf-C2H216.13.3e-05251276123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            y+Cp   Cgk + + + L+ H++t H
  Traes_1DS_0BBC3B5D3.1 251 YVCPyeGCGKAYIHGYKLNLHLKTqH 276
                            99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-1288118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01492116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09492121IPR007087Zinc finger, C2H2
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.19E-895145No hitNo description
Gene3DG3DSA:3.30.160.602.5E-13119143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.129121150IPR007087Zinc finger, C2H2
SMARTSM003559.7E-4121145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-12132184No hitNo description
Gene3DG3DSA:3.30.160.603.9E-18144176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884151180IPR007087Zinc finger, C2H2
SMARTSM003550.0011151175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153175IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-8177206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.91181210IPR007087Zinc finger, C2H2
SMARTSM003550.073181205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183205IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-7184205No hitNo description
Gene3DG3DSA:3.30.160.601.1E-9244274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-7246274No hitNo description
SMARTSM003550.0077251276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577251281IPR007087Zinc finger, C2H2
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEYAAAGAGG YYYYPPAQQP QPPPQTLRRR PRPAARWVKQ WIPQDLASPG SKCALFKWVR  60
EDVYKNLKEN GGAGQEPEAQ PRKVEPATEI LFLCSYDNCG KTFVDVAALR KHAHVHGERQ  120
YVCQEPGCGK KFVDSSKLKR HHLTHTGQKD FVCPHPGCGK AFSLDFNLRA HLKTHAVENY  180
HICPFPACGK RFTSDFKLKC HIKTHEKTGS PIAVQHTPPA EKPQSTIKPS IQATPKPSAP  240
TPPSFSSERP YVCPYEGCGK AYIHGYKLNL HLKTQHPDHN QGDNGRSATP AAGYNYADGG  300
DIAPNPKRSK TNQGHRAPPS NAYNVKVSSR MAVDTSGAKN QWPGKGMYDD DSEETEEDPG  360
GNNIEDGWRY GNQNADYEET EEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34842071119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591910.0AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180408.10.0uncharacterized zinc finger protein At4g06634-like
TrEMBLA0A3B5ZMK50.0A0A3B5ZMK5_WHEAT; Uncharacterized protein
STRINGTraes_1DS_0BBC3B5D3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.15e-98C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]