PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_CE56482B5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 776aa    MW: 88951.9 Da    PI: 6.6594
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_CE56482B5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.85.6e-16168249191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+++A  +GF  r+ +++k+      +k ++ C+++gk +++++   +++r+ ++   +C+ak+ vk++ +++we t +++eHnH+
  Traes_1DL_CE56482B5.1 168 RFYSTHAMLTGFAARRGTNYKR------KKFHLLCNRSGKLKPTQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHP 246
                            5********************9......4678***********9988..88888889999**********9.9*************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_1DL_CE56482B5.1 247 LCP 249
                            *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-13168249IPR004330FAR1 DNA binding domain
PfamPF105514.8E-29372464IPR018289MULE transposase domain
PROSITE profilePS509669.013654690IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MQAADNFGEQ TSGPAPATNF EQVVMTYPDR VLEPSHSGAG LRVEKEHAGK QAILEGGLQP  60
IGEINQEHAS NGIATTVQGL LADMLHKQTN SVDSIVQHAE EQDQLYDVTE GHELCSNDTS  120
SGSDAGSSSG SELDTELGKC FYPSIEALEN SRPPEVGMKF PTLEDAERFY STHAMLTGFA  180
ARRGTNYKRK KFHLLCNRSG KLKPTQDLQR KRKVNVLGSQ CQAKVIVKLH NEQWEFTGVK  240
HEHNHPLCPS PSLTSFFLDH KYLSSEEKLF LRVLQQSRVN PRKAMNIFQR MRSNFGNVSS  300
SNEKDMSNSQ CVDQWRKENS DVETALKRFK ELELRNQGFS YTMQKDEDNI VRSLFWTDAR  360
SKVDYEIFGD FISFSTTYST NRHNMPFTPI IGVNNHGRIL VFGCALLQDQ KAETFKWMFQ  420
TFLHVMRGKL PKTIIIDQDE GMVKAIAEVM PQVRHRLCKF SVMRKAQEML GAFMAARGNM  480
NAELHSLVDN SLTEKEFEEG WAVLIERYDA SENEYLRLMW KTRKSWVPVY FRADFYPFVE  540
SAEHGEGSNL LFKDNVLPKD RIEKFIEQYE RIQEGIVKTE EEDTLQSATE PAYFSMQPIE  600
KHAACIYTRQ IFLRVQKELY YSTALNAHEI QGGAAYRLEK VFDYENPEFD RNSFEVLVEP  660
GTYTFKCQCA KFTRDGILCC HIFRVFTQLG VIEIPARYIV PRWAREFREE RLKEYEEKCS  720
KRTEGRKRCA MLLGKMADIG KGICADSAKS GCFMLELDKV QEKLVGADDQ IVLWSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178460.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A452ZIF30.0A0A452ZIF3_AEGTS; Uncharacterized protein
STRINGTraes_1DL_CE56482B5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.26e-82FAR1-related sequence 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]