PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_9FB53E48A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 128aa MW: 14621.6 Da PI: 8.9668 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 9.1e-18 | 1 | 42 | 15 | 56 |
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Traes_1DL_9FB53E48A.1 1 MEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 42 79*************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-15 | 1 | 45 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.02E-14 | 1 | 45 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-17 | 1 | 49 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.4E-7 | 1 | 48 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-15 | 1 | 42 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.742 | 1 | 44 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.5E-5 | 15 | 24 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 19 | 42 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-5 | 24 | 40 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MEALFKECPH PDDKQRLKLS QELGLKPRQV KFWFQNRRTQ MKAQQDRADN VILRAENESL 60 KTDNYRLQAA IRNVVCPSCG HAAVIGDMSY EEQNLRIENA RLKDELDRLA CIASRYGGGR 120 QPGMSSAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ250986 | 1e-128 | AJ250986.2 Zea mays mRNA for OCL4 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163828.1 | 1e-85 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q336P2 | 2e-76 | ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A287FIJ3 | 6e-87 | A0A287FIJ3_HORVV; Uncharacterized protein | ||||
STRING | Traes_1DL_9FB53E48A.1 | 1e-91 | (Triticum aestivum) | ||||
STRING | TRIUR3_19363-P1 | 5e-86 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP56283 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 3e-53 | homeobox-7 |
Publications ? help Back to Top | |||
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