PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_93BCED372.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 658aa MW: 73495.8 Da PI: 6.7396 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 65.3 | 1.3e-20 | 2 | 43 | 35 | 76 |
ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 35 vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 ++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k Traes_1DL_93BCED372.2 2 IDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 43 7899***********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 19.119 | 1 | 43 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-10 | 2 | 30 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.1E-18 | 2 | 46 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-14 | 2 | 43 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MIDGVQKRYC QQCGKFHILL DFDEDKRSCR RKLERHNKRR RRKPDSKGTL EKEIDEQLDL 60 SADGSGNGEI REENIDGASC DMLETVLSNK VLDRETPVGS EDALSSPTCT QLSLQNDRSK 120 SIVTFAASAE ACLGAKQENA KLTNSPVHDS KSAYSSSCPT GRISFKLYDW NPAEFPRRLR 180 NQIFEWLSSM PVELEGYIRP GCTILTVFIA MPQHMWDKLA EDTANLVRNL VNAPSSLLLG 240 KGAFFVHANN TIFQVLKDGA TLMSTRLEVQ APRIHCVHPT WFEAGKPIEL LLCGSSLDQP 300 KFRSLLSFDG EYLKHDCCRL TSRGTFGCVK NGAPTFDSHH EVFRINITQT KPDTHGPGFV 360 EVENVFGLSN FVPILFGSKQ LCFELERIQD ALCGSSKYKS ANGEFPGITS DPCEHWKLQQ 420 TAMSGFLIEI GWLIKKPSPD EFKNLLSKTN VKRWICVLEF LIQNNFINVL EMIVKSSDNI 480 IGSEILSNLE SGRLEHHVTA FLGYIRHARI IVDQRAKHNE ETQLQTRWCG DSVSDQPSLG 540 TSVPLGKENV TASDDFCLPS TNAECEEEES VPLVTNEAVS HRQCCPSEMN ARWLNPALVA 600 PFPSGVMRTR LVATVAVAAI LCFTACVAVF HPDRVGVLAA PVKRYLFRDC PPWHHSGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 6e-18 | 1 | 50 | 38 | 87 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 43 | KRSCRRKLERHNKRRRRKP |
2 | 29 | 41 | RRKLERHNKRRRR |
3 | 36 | 43 | NKRRRRKP |
4 | 37 | 42 | KRRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250312 | 0.0 | AK250312.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf72c21, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161545.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q6I576 | 0.0 | SPL9_ORYSJ; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A3B5ZVU8 | 0.0 | A0A3B5ZVU8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A452Z3C6 | 0.0 | A0A452Z3C6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1DL_93BCED372.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 1e-115 | squamosa promoter binding protein-like 7 |
Publications ? help Back to Top | |||
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