PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_92BCA55C0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 406aa    MW: 45615.2 Da    PI: 8.7366
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_92BCA55C0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.53.4e-2548149199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F
  Traes_1DL_92BCA55C0.2  48 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLF 134
                            99****************************97444.34579*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+++v+r+
  Traes_1DL_92BCA55C0.2 135 L--RGDDGELRLGVRRA 149
                            *..3489999****996 PP
2Auxin_resp102.84.3e-34174255183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            +a++++++s+F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + +++d++er+ +G+++g+s++dp+rWp+SkWr+L+
  Traes_1DL_92BCA55C0.2 174 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHPFSIGMRFKDSNDSDDANERS-TGLISGISEVDPIRWPGSKWRCLQ 255
                            578899***************************************************9.9**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-4237182IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-3944151IPR015300DNA-binding pseudobarrel domain
CDDcd100174.62E-2246148No hitNo description
PfamPF023624.2E-2348149IPR003340B3 DNA binding domain
SMARTSM010192.9E-2248150IPR003340B3 DNA binding domain
PROSITE profilePS5086313.23948150IPR003340B3 DNA binding domain
PfamPF065076.9E-28175255IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MPFIALCKCS PSVLQMFRQN VRESASEEGE DEMAGGDGEK KPRMPHMFCK TLTASDTSTH  60
GGFSVPRRAA EDCFAPLDYK QVRPSQELVA KDLHGTQWRF RHIYRGQPRR HLLTTGWSSF  120
VNKKKLVSGD AVLFLRGDDG ELRLGVRRAV QLRNEALFRA VNSNESKLHT LSAVASSLEN  180
RSIFHVCFDP RSGASEFIVP YWRFSKSLNH PFSIGMRFKD SNDSDDANER STGLISGISE  240
VDPIRWPGSK WRCLQVRWDD GNHCNHQRRV SPWEIERIGG SIQVNDCLSA SSSKRAKLYF  300
PQGNLDAPVT DGNDFPDPVE TGSFHRVLQG QELLMGSRAQ GAARSRSPDV AKFRPPDHQR  360
FSANAGSYMP QQSPAEFPYH SSGFGESLGF PEVLQGQEMS RALRFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-7538276150388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574870.0AK357487.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188126.10.0auxin response factor 14-like
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A452ZJM30.0A0A452ZJM3_AEGTS; Auxin response factor
STRINGTraes_1DL_92BCA55C0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-125ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]