PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1DL_2C7481DB3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 53aa MW: 6401.33 Da PI: 7.7926 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.3 | 8.2e-11 | 4 | 41 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Traes_1DL_2C7481DB3.1 4 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 41 554459******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.758 | 1 | 45 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 1 | 51 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0068 | 2 | 49 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-16 | 2 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.9E-20 | 2 | 41 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 7.86E-11 | 3 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 53 aa Download sequence Send to blast |
AWLFEHFLHP YPSDVDKHIL ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YAE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 7e-16 | 1 | 49 | 15 | 63 | Homeobox protein Meis2 |
3k2a_B | 7e-16 | 1 | 49 | 15 | 63 | Homeobox protein Meis2 |
4xrm_A | 7e-16 | 1 | 49 | 15 | 63 | Homeobox protein Meis2 |
4xrm_B | 7e-16 | 1 | 49 | 15 | 63 | Homeobox protein Meis2 |
5bng_A | 7e-16 | 1 | 49 | 11 | 59 | Homeobox protein Meis2 |
5bng_B | 7e-16 | 1 | 49 | 11 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK358409 | 6e-74 | AK358409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1076A02. | |||
GenBank | AK359112 | 6e-74 | AK359112.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089L06. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793881.1 | 1e-32 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 9e-32 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A3L6TVB7 | 4e-33 | A0A3L6TVB7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia02908.1.p | 5e-32 | (Panicum virgatum) | ||||
STRING | Pavir.J15357.1.p | 7e-33 | (Panicum virgatum) | ||||
STRING | Traes_1DL_2C7481DB3.1 | 6e-33 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41410.1 | 4e-34 | TALE family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|