PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DL_1806CFE5F1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 229aa MW: 26108 Da PI: 8.2317

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DL_1806CFE5F1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.8	4.6e-19	85	174	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k++++s+v++ +l lp +f+++h ++ ++ +++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l + Traes_1DL_1806CFE5F1.1 85 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEP 165 89*******************9994.44.4459***********..555444..*********************9876 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++f ++ +f+ Traes_1DL_1806CFE5F1.1 166 DRF--KIYIFK 174 777..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.9E-22	77	175	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.46E-25	78	174	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.99E-27	83	174	No hit	No description
PROSITE profile	PS50863	12.774	85	176	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-17	85	174	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-23	85	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
RASPKSRKKF EATTEVRRSS RARTTVSYKD DFPELDDFVR RRRVSKSVHS GRGYTGRISS 60 YQQQQRAFKR AEKLQDSLDP DNPSFVKTMV RSHVSSCFWL GLPSSFCKDH LPPREHKMVL 120 EDEEGVEFDA VYIGNRTGLS GGWRGFSMHH DLEDGDSLVF ELAEPDRFKI YIFKAIEDGK 180 EAEPNDNNAD VDSDSAQEVP DQTDSPVSEP PSSPEPLKGA KRRKLRGRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	222	LKGAKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371930	0.0	AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158104.1	1e-169	B3 domain-containing protein Os05g0481400
Swissprot	Q5KQI4	1e-115	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A3B5ZY00	1e-168	A0A3B5ZY00_WHEAT; Uncharacterized protein
STRING	EMT05021	1e-165	(Aegilops tauschii)
STRING	Traes_1DL_1806CFE5F.1	1e-168	(Triticum aestivum)
STRING	Traes_1DL_1806CFE5F1.1	1e-168	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11370	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	4e-43	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]