PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DL_1141C575C.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 279aa MW: 30679.6 Da PI: 7.2044

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DL_1141C575C.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	58	112	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl Traes_1DL_1141C575C.2 58 KQRLRWTSDLHSRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 112 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.171	55	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-30	56	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	57	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-25	58	113	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-7	60	111	IPR001005	SANT/Myb domain
Pfam	PF14379	4.5E-24	145	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MCMTSSCNCC STLMMYHAKK FSVPFAPQRA QNSEHVSNIG AFGGSNISNP ANPVGSGKQR 60 LRWTSDLHSR FVDAIAQLGG PDRATPKGVL TVMGVPGITI YHVKSHLQKY RLAKYIPESP 120 AEGSKDEKKD SSDSFSNADS APGSQINEAL KMQMEVQKRL HEQLEVQKQL QLRIEAQGKY 180 LQMIIEEQQK LGGSLEGSEE RKLSHSPPTL DDYPDSIQPS PKKPRLDDLS TDAVRGVAQP 240 GFESHLVGPW DQELCPKTNI CDPAFQVDEF KANPGLSKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	57	115	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY625680	0.0	AY625680.1 Triticum aestivum MYB transcription factor (MYB80) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198212.1	0.0	myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	1e-70	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A3B5ZY80	0.0	A0A3B5ZY80_WHEAT; Uncharacterized protein
STRING	Traes_1DL_1141C575C.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-65	G2-like family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]