PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BS_7F7F9918B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 189aa MW: 21634.4 Da PI: 9.298 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.1 | 6.8e-24 | 24 | 111 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 f+++Y+ ++GF+vrk++++ sk +g+it+ +fvC +eg+r++ +++ + ++ raetrt+Cka++ +++++ +++ evt+++leHnH Traes_1BS_7F7F9918B.1 24 FWRAYGGRAGFDVRKKYNNVSKFDGKITSCRFVCANEGHRKKGQRE-SVQKCFRAETRTDCKARMSLTLDReSENLEVTDVVLEHNHL 110 9******************************************999.899999****************9999**************8 PP FAR1 89 l 89 l Traes_1BS_7F7F9918B.1 111 L 111 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-19 | 24 | 111 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MAQSDKGMPQ VGMLFKSSEE AWLFWRAYGG RAGFDVRKKY NNVSKFDGKI TSCRFVCANE 60 GHRKKGQRES VQKCFRAETR TDCKARMSLT LDRESENLEV TDVVLEHNHL LHLPQTRHLM 120 ASQRKISEFQ SFEIEAADDS GGKTQCTSDM NEPSKAQEND DPNMQQGDDL LRAARLKKKE 180 VQSKNSKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172364.1 | 1e-92 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453IBS9 | 5e-91 | A0A453IBS9_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453IBT4 | 6e-91 | A0A453IBT4_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453IBT6 | 6e-93 | A0A453IBT6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1BS_7F7F9918B.1 | 1e-140 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-13 | FAR1 family protein |
Publications ? help Back to Top | |||
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