PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BL_E2629CBC1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 266aa MW: 29758.5 Da PI: 8.6422

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BL_E2629CBC1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a++ LGG+ +AtPk++l+lm+v gLt++hvkSHLQ+YR Traes_1BL_E2629CBC1.1 23 PRLRWTPDLHRCFVHAIHTLGGQYRATPKRVLQLMGVAGLTISHVKSHLQMYRN 76 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-30	19	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.527	19	79	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-15	21	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	23	76	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-9	24	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MTMAAGRDQR VEGVRQYNRS RVPRLRWTPD LHRCFVHAIH TLGGQYRATP KRVLQLMGVA 60 GLTISHVKSH LQMYRNMRGN DLDMMQGIQQ MDQEHTFAGG GMEVWTDMQQ VHHHSEYCDG 120 PYCRCHSTKH TKGSLLHHPQ LKRPSEMETA HESGASPQKN LVIRGQGICE RDVTSGTYVL 180 AAAGQAYYYS HCMQTTTTTH EQGHHLPPRS RTWQRTPAAG GGGEQSACPG CTPAPRERER 240 DLAAPRRGAG GDLAPYCEER SGELVH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572016.3	9e-86	uncharacterized protein LOC100832345
TrEMBL	A0A3B5YXG2	0.0	A0A3B5YXG2_WHEAT; Uncharacterized protein
TrEMBL	A0A446JXE4	0.0	A0A446JXE4_TRITD; Uncharacterized protein
STRING	Traes_1BL_E2629CBC1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7610	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	8e-31	G2-like family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]