PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_DED873B03.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 734aa MW: 84509.9 Da PI: 6.7358 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.5 | 1.5e-15 | 126 | 207 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+++A +GF r+ +++k+ k ++ C+++g+ +++++ +++r+ ++ +C+ak+ vk++ +++we t +++eHnH+ Traes_1BL_DED873B03.1 126 RFYSTHAMLTGFAARRGTNYKR------RKFHLLCNRSGRLKPTQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHP 204 5********************9......5678***********9988..88888889999**********9.9*************** PP FAR1 89 lap 91 l+p Traes_1BL_DED873B03.1 205 LCP 207 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-13 | 126 | 207 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.8E-29 | 330 | 422 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.075 | 612 | 648 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MEKEHVGKQA IPEGGLQSIG EINQGHASNG IGTTVQGLLA DMLHKQTNSV DPTVQQAEEQ 60 DQLHDVTEGH ELCSNDTSSG SDAGSSSGSE LDTELGKCFY PSIEALENSR PPEVGMKFPT 120 LEDAERFYST HAMLTGFAAR RGTNYKRRKF HLLCNRSGRL KPTQDLQRKR KVNVLGSQCQ 180 AKVIVKLHNE QWEFTGVKHE HNHPLCPSPS LTSFFLDHKY LSSEEKLFLR VLQQSRVNPR 240 KAMNIFQRMR SNFGNVSSSN EKDMSNSQCV DQWRKENSDV ETALKRFKEL ELRNLGFSYT 300 MQKDEDNIVR SLFWTDARSK VDYEIFGDFI AFSTTYSTNR HNMPFTPIIG VNNHGRILVF 360 GCALLQDQKA ETFKWMFQTF LHVMRGKLPK TIIIDQDEGM VKAIAEVMPQ VRHRLCKFSV 420 MRKAQEILGA FMAARGNMNA ELHSLVDNSL TEKEFEEGWA VLIERYDASE NEYLRLMWKT 480 RKNWEPVYFQ ADFYPFVESA EHGEGSNLLF KDNVLPKDRI EKFIEQYERI QEGIVKTEEE 540 DTLQSATEPA YFSMQPIEKH AARIYTRQIF LRVQKELYYS TALNAHEIQA GAAYRLEKVF 600 DYENPEFDRN SFEVLVEPGT HTFKCQCAKF TRDGILCCHI FRVFTQLGVI EIPAQYIVPR 660 WAREFREERL KEYEEKCSKR TEDRKRCAML LGKMADIGKG ICADSAKSGC FMLELDKVQE 720 KLVGADDQIV LWSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178460.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A452ZIF3 | 0.0 | A0A452ZIF3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1BL_DED873B03.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 2e-80 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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