PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_BDF0801D01.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 402aa    MW: 44064.4 Da    PI: 4.7353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_BDF0801D01.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-20150200155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++g
  Traes_1BL_BDF0801D01.2 150 CGFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAEDAARAYDEAARAMYG 200
                             79*****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-13150200IPR001471AP2/ERF domain
CDDcd000186.88E-32150210No hitNo description
PROSITE profilePS5103222.3151208IPR001471AP2/ERF domain
SMARTSM003801.4E-35151214IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-21151209IPR016177DNA-binding domain
PRINTSPR003673.2E-10152163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31152209IPR001471AP2/ERF domain
PRINTSPR003673.2E-10174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSYLSVLFVY PVSDMSCLSV LLVYPVSDMC CPVCLFFSVT RTCGAEESTR SHVLVKPIGS  60
SNLPCNEYAL LARQNPKGDA QPVASILRKK RPRRSRDGPN SVSETIRRWK EVNQQLEHDP  120
QGAKRARKPP AKGSKKGCMQ GKGGPENTQC GFRGVRQRTW GKWVAEIREP NRVSRLWLGT  180
FPTAEDAARA YDEAARAMYG ALARTNFPVH PAQAPAVAVA AAIEGVVRGA SASCESTTTS  240
TNHSDVASSL PRQAQALEIY SQPDVLESTE SVVLTPVEHY SHQDSVPDAG SSIARSTSEE  300
DVFEPLEPIS SLPDGESDGF DIEELLRLME ADPIEVEPVN GGSWNGVEIG QQEPLYLDGL  360
DQGMLEGMLQ SDYPYPMWIS EDRAMHNPAF HDAEMSEFFE GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16152209361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7813490.0AY781349.1 Triticum aestivum DREB transcription factor 3A (DREB3) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156297.10.0dehydration-responsive element-binding protein 2B-like isoform X1
SwissprotQ5W6R41e-85DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A446JYT30.0A0A446JYT3_TRITD; Uncharacterized protein
STRINGTraes_1BL_BDF0801D01.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-36ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]