PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_B7F04D24D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 315aa MW: 34210.9 Da PI: 7.3042 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 93 | 137 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky Traes_1BL_B7F04D24D.1 93 PWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 137 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.274 | 86 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.04E-17 | 88 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-19 | 89 | 141 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-10 | 90 | 140 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 90 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-11 | 93 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-9 | 93 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MTRRCSHXCS HNGHNSRTCP NRGVKIFGVR LTDGSIRKSA SMGNLSLLGG STSGGGGASP 60 ADVGHDAAAE GYASDDFVQG SSSANRERKK GVPWTEEEHR RFLLGLQKLG KGDWRGISRN 120 FVVSRTPTQV ASHAQKYFIR QANMSRRKRR SSLFDLVPDE SDLPPLPGNQ EPEAQILNHP 180 PLPPPMEEEE VESMESDTSV IAESSSASAI MPENLQSSYP VLVPAYFSPF LQFSVPFWQN 240 QNDGDDLGQG THEIVKPVPV HSKSPINVDE LVGMSKLSIG DPKQDTVSTS LSLKMVGGQN 300 RQSAFQANLP TRAQA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366515 | 0.0 | AK366515.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043L05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169621.1 | 0.0 | uncharacterized protein LOC109755147 | ||||
Swissprot | Q7XC57 | 0.0 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | W4ZMU5 | 0.0 | W4ZMU5_WHEAT; MYBS3 | ||||
STRING | Traes_1BL_B7F04D24D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-74 | MYB_related family protein |
Publications ? help Back to Top | |||
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