PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_B34F44FC1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GATA | ||||||||
Protein Properties | Length: 99aa MW: 10939.5 Da PI: 10.8344 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.2 | 3e-20 | 25 | 58 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt +Tp+WR+gpdg k+LCnaCG++yr + Traes_1BL_B34F44FC1.1 25 CRHCGTAETPQWREGPDGRKMLCNACGVRYRAGR 58 *******************************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.9E-15 | 19 | 73 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.8E-15 | 23 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.1E-16 | 24 | 57 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.648 | 25 | 55 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.6E-18 | 25 | 59 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.44E-14 | 25 | 73 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 25 | 50 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MEPTEGAARR AVASPALSGL GQLLCRHCGT AETPQWREGP DGRKMLCNAC GVRYRAGRLV 60 PEYRPLRSPT FSPELHTNRH SRVAQMRSAR APHPLPPDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685360.1 | 2e-32 | GATA transcription factor 5-like | ||||
Swissprot | Q9SV30 | 4e-27 | GATA8_ARATH; GATA transcription factor 8 | ||||
TrEMBL | A0A3B5YW93 | 2e-63 | A0A3B5YW93_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446JSJ9 | 2e-63 | A0A446JSJ9_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_B34F44FC1.1 | 2e-66 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-29 | GATA family protein |
Publications ? help Back to Top | |||
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