PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_A8FC9D468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 283aa MW: 31936.5 Da PI: 8.642 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.2 | 1.5e-18 | 139 | 225 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k++++s+v++ +l lp +f+++h ++ ++ +++lede+g +++ + +++ + l++GW++F ++L++gD++vF+l + + Traes_1BL_A8FC9D468.1 139 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPD 220 89*********************9994.44.4459***************..555444..***********************98767 PP EE..E CS B3 89 efelv 93 +f+ + Traes_1BL_A8FC9D468.1 221 RFKIY 225 77444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-21 | 131 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-24 | 132 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.89E-26 | 137 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.464 | 139 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.6E-23 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-17 | 139 | 225 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MATAEASSAS GAGAAYEEER RKRILDNLKH LEDLGISKMA KSLIQATRQQ DKTPRASPKS 60 RKKFEATTEV RRSSRARTTV SYKDDFPELD DFVRRRRVSK SVDNGRGYTG RISSYQQQQR 120 AFKRAEKLQD SLDPDNPSFV KTMVRSHVSS CFWLGLPSSF CKDHLPPREH KMVLEDEEGV 180 EFDAVYIGNR TGLSGGWRGF SMHHDLEDGD SLVFELAEPD RFKIYISKAI EDGKEAEPND 240 KNADVDSDSA QEVPDQTDSP VSEPPSSPEP LKGAKRRKLR GRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 276 | LKGAKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371930 | 0.0 | AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158104.1 | 0.0 | B3 domain-containing protein Os05g0481400 | ||||
Swissprot | Q5KQI4 | 1e-133 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A3B5Z1K3 | 0.0 | A0A3B5Z1K3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BL_A8FC9D468.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11370 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-42 | B3 family protein |
Publications ? help Back to Top | |||
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