PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_7513DC3F9.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YC | ||||||||
Protein Properties | Length: 273aa MW: 30403.9 Da PI: 5.1526 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.5 | 1.3e-17 | 2 | 74 | 24 | 96 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 rikki++adedv +i+ +Pvl+ska elf+ +l r+++ + e+ +t+ s +++++ + d++dfl ++ Traes_1BL_7513DC3F9.2 2 PRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVEKGVKTVSSSHLKQCIHSYDVYDFLKNVS 74 69*******************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 5.1E-16 | 2 | 61 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.7E-22 | 3 | 62 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.81E-18 | 8 | 76 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MPRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVEKGVK TVSSSHLKQC 60 IHSYDVYDFL KNVSSKVPDL GPPDSSVDDK LGKRRKHGED ESEEESKRTR NEAACHTSNG 120 RGRGRGRGRG RRAGRGAERE IEHHELGCAQ FSKPGHLKVE IGDVVLDTSE TKEHTPLSNA 180 RASLRNIDLN LDLADYEEDT VAPQVQPSAP VVTVAPQVQT SGPSVSQLKE EVETKDFLGW 240 QMPEMNKMAM DPVQFALSSN HRLEEDEDYD NEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 6e-18 | 3 | 61 | 16 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 129 | RGRGRGRGRG |
2 | 120 | 130 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250593 | 0.0 | AK250593.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf92h11, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194314.1 | 1e-169 | dr1-associated corepressor homolog isoform X1 | ||||
TrEMBL | A0A3B5Z262 | 0.0 | A0A3B5Z262_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BL_7513DC3F9.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-42 | nuclear factor Y, subunit C11 |
Publications ? help Back to Top | |||
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