PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_43408C9B0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 620aa    MW: 68027.7 Da    PI: 5.9537
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_43408C9B0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-193290357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ rq+kvWFqNrR ++k+
  Traes_1BL_43408C9B0.2 32 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 90
                           5678****************************************************996 PP
2START1619e-511703772204
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g 
  Traes_1BL_43408C9B0.2 170 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGn 256
                            6899******************************************************9999999999.****************999 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h d
  Traes_1BL_43408C9B0.2 257 gGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLD 344
                            9********************************************9999998888899****************************** PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204
                            l++++++++lr+l++s+++ ++k+++a+l++ +
  Traes_1BL_43408C9B0.2 345 LEAWSVPEVLRPLYESSRVVAQKMTTAALRHIR 377
                            *****************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-191390IPR009057Homeodomain-like
PROSITE profilePS5007115.6772791IPR001356Homeobox domain
SMARTSM003894.3E-162995IPR001356Homeobox domain
SuperFamilySSF466891.5E-163193IPR009057Homeodomain-like
CDDcd000866.31E-173292No hitNo description
PfamPF000461.9E-163390IPR001356Homeobox domain
CDDcd146868.07E-684123No hitNo description
PROSITE profilePS5084827.274160388IPR002913START domain
CDDcd088756.85E-74164380No hitNo description
Gene3DG3DSA:3.30.530.205.8E-22168355IPR023393START-like domain
SMARTSM002347.0E-38169379IPR002913START domain
SuperFamilySSF559614.53E-37170381No hitNo description
PfamPF018521.0E-48170377IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAAAVAAMRC GSGSGSDGGG GGYDKGGMDS GKYVRYTPEQ VEALERVYAE CPKPTSTRRQ  60
QLLRECPILS NIEPRQIKVW FQNRRCRDKQ RKESSRLQAV NRKLSAMNKL LMEENERLQK  120
QVSQLVHENA YMKQQLQNPS LANDTSCESN VTTPPNPLRD ASNPAGLLAI AEETLTEFLS  180
KATGTAVDWV PMPGMKPGPD SFGIVAVSHG CRGVAARACG LVNLEPTKIV EILKDRPSWF  240
RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL  300
SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES  360
SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRGFN DAISGFNDDG  420
WSVMAGDGIE DVIIACNSKK IRSNNTAPNA FIVPGGVICA KASMLLQSVP PAVLVRFLRE  480
HRSEWADYNF DAYSASALKS SSCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ  540
ALDEGLLSRD IHLLQFCTGI DEKSMGSCFQ LVFAPIDELF PDDAPLISSG FRVIPLDMKT  600
VEYPVSLIYC YSEIQDTTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620090.0AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174778.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A446JTP40.0A0A446JTP4_TRITD; Uncharacterized protein
STRINGTraes_1BL_43408C9B0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]