PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_0C01933E1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 100aa    MW: 11292.1 Da    PI: 7.3601
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_0C01933E1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-081762345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                            W++ E + + +a + +G      W+++a+ mg ++++++++ ++q
  Traes_1BL_0C01933E1.1 17 EWSKKENKMFEEALACYGVSapnLWEKVASAMGGTKSAEEVRRHFQ 62
                           7*****************999*9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8761065IPR017877Myb-like domain
SuperFamilySSF466892.47E-101263IPR009057Homeodomain-like
SMARTSM007174.6E-61467IPR001005SANT/Myb domain
PfamPF002493.0E-71762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-41761IPR009057Homeodomain-like
CDDcd001671.12E-41762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSSGSSSRST SPTSDSEWSK KENKMFEEAL ACYGVSAPNL WEKVASAMGG TKSAEEVRRH  60
FQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612032e-53AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B5Z4U27e-36A0A3B5Z4U2_WHEAT; Uncharacterized protein
STRINGTraes_1BL_0C01933E1.11e-36(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36570.12e-13RAD-like 3