PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G36570.1 | ||||||||
Common Name | AP22.24, ATRL3, C7A10.790, RL3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 58aa MW: 6660.3 Da PI: 9.1052 | ||||||||
Description | RAD-like 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.3e-10 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT E +l+ +a + + + +W+ +ar +g g+++++++ ++ AT4G36570.1 11 SWTRKENKLFERALATYDQDtpdRWHNVARAVG-GKSAEEVRRHY 54 6*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.11E-13 | 4 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.654 | 7 | 58 | IPR017884 | SANT domain |
SMART | SM00717 | 7.7E-5 | 8 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-8 | 11 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-6 | 11 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-7 | 12 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000014 | anatomy | rosette leaf | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
MASNSMSSSA SWTRKENKLF ERALATYDQD TPDRWHNVAR AVGGKSAEEV RRHYEPPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-18 | 1 | 55 | 1 | 54 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.47987 | 1e-93 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G36570 | |||||
AtGenExpress | AT4G36570 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G36570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q6NNN0 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G36570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161589 | 4e-94 | AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85. | |||
GenBank | CP002687 | 4e-94 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99708 | 4e-94 | Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195375.4 | 7e-37 | RAD-like 3 | ||||
Swissprot | Q6NNN0 | 2e-34 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | D7MBG5 | 4e-32 | D7MBG5_ARALL; At4g36570 | ||||
STRING | AT4G36570.1 | 3e-36 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Link Out ? help Back to Top | |
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Phytozome | AT4G36570.1 |
Entrez Gene | 829809 |
iHOP | AT4G36570 |
wikigenes | AT4G36570 |
Publications ? help Back to Top | |||
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