PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AS_94B6230FB1.1

Common Name

WLIP19, Wlip19a

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 150aa MW: 16284.3 Da PI: 10.333

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AS_94B6230FB1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.7e-14	28	86	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR+RK++++eeL ++ L+aeNk+ ++ ++ e k++ e+ Traes_1AS_94B6230FB1.1 28 RKRKRMLSNRESARRSRARKQQRMEELIAEASRLQAENKRVEAQIGAYTTELTKVDGEN 86 57899****************************************99999998887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-19	24	88	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-12	25	82	No hit	No description
PROSITE profile	PS50217	11.507	26	89	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-10	28	81	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.75E-11	28	81	No hit	No description
PROSITE pattern	PS00036	0	31	46	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MSSPSRRSSS PESNIDGGSG SGSAGDERKR KRMLSNRESA RRSRARKQQR MEELIAEASR 60 LQAENKRVEA QIGAYTTELT KVDGENAVLR ARHGELAGRL QALGGVLEIF QVAGAPVDIP 120 EIPDPLLRPW QSPFAPQLAT AGGMPDAFQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	47	RRSRARKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB193552	0.0	AB193552.1 Triticum aestivum WLIP19 mRNA for bZIP transcription factor, complete cds.
GenBank	AB334127	0.0	AB334127.1 Triticum aestivum Wlip19a mRNA for basic region/leucine zipper protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158427.1	1e-75	ocs element-binding factor 1-like
TrEMBL	A0A446ILJ8	1e-103	A0A446ILJ8_TRITD; Uncharacterized protein
TrEMBL	Q53UC7	1e-103	Q53UC7_WHEAT; BZIP transcription factor
STRING	Traes_1AS_94B6230FB1.1	1e-103	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	7e-22	basic region/leucine zipper motif 53

Publications ? help Back to Top
Kobayashi F, et al. Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat. J. Exp. Bot., 2008. 59(4): p. 891-905 [PMID:18326864] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]