PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_90F3120F8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 387aa MW: 42935.1 Da PI: 9.8162 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.4e-17 | 58 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Traes_1AS_90F3120F8.1 58 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 107 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.8 | 5.5e-13 | 150 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g Traes_1AS_90F3120F8.1 150 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 200 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-9 | 58 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-16 | 58 | 116 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-32 | 59 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-17 | 59 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.24E-11 | 59 | 117 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 59 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-8 | 150 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 150 | 209 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.14E-24 | 150 | 210 | No hit | No description |
SMART | SM00380 | 1.9E-31 | 151 | 214 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-16 | 151 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.277 | 151 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 152 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 190 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MPVPQHWAEL GFFRPAAPPP DMRILQLQQQ AHAPPPPPPA AQPPVAKKSR RGPRSRSSQY 60 RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNLSDYE 120 DDMKQMKGLS KEEFVHVLRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL 180 FDNEVEAARA YDKAAIKCNG REAVTNFEPS TYDAELLNEV AAEGADVDLN LSISQPTSQS 240 PKRDKSSLGL QLHHGSYDGS ELKRPKVDAP PEMVAIPHRY PLLTEHPPIW HGQSYPLFLN 300 NEEAARDHSR RPEVATGAVP TWAWRVSHPP PTQPMPLFSS SSSAAASSGF SKTAAAAAPG 360 APSASFRFDP MAPSSSSSNQ HHHHHPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX473823 | 0.0 | JX473823.2 Triticum aestivum cultivar Zhoumai 18 starch negative regulator RSR1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170161.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AXC3 | 1e-157 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A3B5XUS0 | 0.0 | A0A3B5XUS0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446IKQ7 | 0.0 | A0A446IKQ7_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AS_90F3120F8.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-101 | related to AP2.7 |
Publications ? help Back to Top | |||
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