PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_36AF74187.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 324aa    MW: 35537.8 Da    PI: 6.42
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_36AF74187.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.83.4e-204794148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd llvd++ ++G g+W++ ar+ g++Rt+k+c++rw++yl
  Traes_1AS_36AF74187.2 47 RGPWTAEEDMLLVDYISKHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 94
                           89********************************************97 PP
2Myb_DNA-binding53.45.8e-17100143146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Traes_1AS_36AF74187.2 100 RGNITPEEQLLILDLHSRWGNR-WSKIAQRLP-GRTDNEVKNYWRT 143
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3924298IPR017930Myb domain
SuperFamilySSF466894.12E-3244141IPR009057Homeodomain-like
SMARTSM007174.8E-174696IPR001005SANT/Myb domain
PfamPF002491.2E-174794IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2448101IPR009057Homeodomain-like
CDDcd001678.53E-144994No hitNo description
PROSITE profilePS5129418.81599149IPR017930Myb domain
SMARTSM007177.1E-1599147IPR001005SANT/Myb domain
PfamPF002492.1E-15100143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-23102148IPR009057Homeodomain-like
CDDcd001675.97E-12104143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDMDKEYYKA CMGMEALPMS PAGFSAVTTE AAMAVATASE DEGDLKRGPW TAEEDMLLVD  60
YISKHGEGRW NSLARCAGLR RTGKSCRLRW LNYLRPDVRR GNITPEEQLL ILDLHSRWGN  120
RWSKIAQRLP GRTDNEVKNY WRTRVQKHAK QLHCDVNSDR FRDVVRQVWM PRLLERIQAE  180
SSSSSAAAAA GVGVPALTRA MSSPAGASQY HCFDHASSGG PSRKVAVTMS PDTSSTLRSS  240
LSPAETSHGA HFPAWGAATA TANVDGSMMQ CAGREGGAIG GDQYVIHGDS LSGSWSELLA  300
ATDIPDFEFG NFDDNLWSLE DIYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-264414124120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5872670.0EF587267.1 Triticum aestivum R2R3 Myb-like protein (PIMP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164818.10.0transcription factor MYB30-like
SwissprotQ10MB47e-87MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3B5XV540.0A0A3B5XV54_WHEAT; Uncharacterized protein
TrEMBLA0A446IM090.0A0A446IM09_TRITD; Uncharacterized protein
STRINGTraes_1AS_36AF74187.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.17e-78myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]