PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AS_21ACC7F67.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 27845.7 Da PI: 6.5814 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 46 | 70 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk+F++ Lk Hi+tH Traes_1AS_21ACC7F67.1 46 HICPfpACGKRFTSDFKLKCHIKTH 70 6799999*****************9 PP | |||||||
2 | zf-C2H2 | 16.9 | 1.8e-05 | 116 | 141 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp Cgk + + + L+ H++t H Traes_1AS_21ACC7F67.1 116 YVCPyeGCGKAYIHGYKLNLHLKTqH 141 99*********************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.43E-9 | 26 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-10 | 32 | 71 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.91 | 46 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.073 | 46 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 48 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.8E-10 | 109 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.44E-6 | 111 | 140 | No hit | No description |
SMART | SM00355 | 0.0077 | 116 | 141 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.577 | 116 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 118 | 141 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MLSYWLIVSL WYILPVLTNK SSELQAFSLD FNLRAHLKTH AVENYHICPF PACGKRFTSD 60 FKLKCHIKTH EKTGSPIAVQ HTPPAEKPQS TIKPSIQATP KRSAPTPPSF SSERPYVCPY 120 EGCGKAYIHG YKLNLHLKTQ HPDHNQENNG RSATPAAGYN YADGGDIAPN PKRSKTNQGH 180 RAPPSNAYNV KVSSRMAVDT SGAKNQWPGK GMYDDDSEET EEDPGGNNVE DGWRYGNQNA 240 DDEETEEDED |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK359191 | 0.0 | AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180408.1 | 1e-165 | uncharacterized zinc finger protein At4g06634-like | ||||
TrEMBL | A0A452XKP4 | 0.0 | A0A452XKP4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1AS_21ACC7F67.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G06634.3 | 2e-42 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|