PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_F7D2C31DB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 268aa    MW: 29220.2 Da    PI: 9.5612
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_F7D2C31DB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-1591135347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+ +++++ kqlG+g+W+ I++ + ++Rt+ q+ s+ qky
  Traes_1AL_F7D2C31DB.1  91 PWTEEEHRKFLEGLKQLGKGDWRGISKNFVTTRTATQVASHAQKY 135
                            7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.74484140IPR017930Myb domain
SuperFamilySSF466891.87E-1885140IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1887139IPR006447Myb domain, plants
SMARTSM007172.7E-1188138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-1289134IPR009057Homeodomain-like
CDDcd001678.04E-1191136No hitNo description
PfamPF002497.9E-1391135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEEEGARKAV LFRLFGVEVR GAEEEDDAEP MELKKSTSMP NLACASNSPP LLLPGEASHD  60
KGYASDDGEL ASTPQLKRCR RKAQERKKGI PWTEEEHRKF LEGLKQLGKG DWRGISKNFV  120
TTRTATQVAS HAQKYFLRQT NPGKKKRRAS LFDVGIPAAH SYDDQLPSPQ SVGTKLAPAE  180
KILHTDRGDV PLPSYPGGIR GSNNNMQMQA DELTDRVKKR SKFPTGTSLA AMAASGLELA  240
MSSSASSILE LSIAPPRCYG AVDAIKVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17787RCRRKAQERKK
2143147KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519340.0JF951934.1 Aegilops speltoides clone TaMYB51 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181078.10.0transcription factor DIVARICATA-like
SwissprotB8BI931e-80MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC511e-80MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A3B5Y0A00.0A0A3B5Y0A0_WHEAT; Uncharacterized protein
STRINGTraes_1AL_F7D2C31DB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-36MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]